Hi everyone,
With the latest firmware update of my Qnap NAS, MediQPACS has stopped working.
Being based (badly) on Orthanc I decided to install the latter (v 1.3.0.0.3).
Everything works, but if I send the exams from other nodes the transfer takes place without problems but is not saved on the SQLite DB.
What can I check to solve the problem, maybe I’ve to change something into the index file? The nodes are configured correctly…
Thanks in advance
Luca
Hi Luca,
Could you share your configuration file ?
{
/**
* General configuration of Orthanc
**/
// The logical name of this instance of Orthanc. This one is
// displayed in Orthanc Explorer and at the URI "/system".
"Name" : "MYNAS",
// Path to the directory that holds the heavyweight files (i.e. the
// raw DICOM instances). Backslashes must be either escaped by
// doubling them, or replaced by forward slashes "/".
"StorageDirectory" : "OrthancStorage",
// Path to the directory that holds the SQLite index (if unset, the
// value of StorageDirectory is used). This index could be stored on
// a RAM-drive or a SSD device for performance reasons.
"IndexDirectory" : "OrthancStorage",
// Enable the transparent compression of the DICOM instances
"StorageCompression" : false,
// Maximum size of the storage in MB (a value of "0" indicates no
// limit on the storage size)
"MaximumStorageSize" : 0,
// Maximum number of patients that can be stored at a given time
// in the storage (a value of "0" indicates no limit on the number
// of patients)
"MaximumPatientCount" : 0,
// List of paths to the custom Lua scripts that are to be loaded
// into this instance of Orthanc
"LuaScripts" : [
],
// List of paths to the plugins that are to be loaded into this
// instance of Orthanc (e.g. "./libPluginTest.so" for Linux, or
// "./PluginTest.dll" for Windows). These paths can refer to
// folders, in which case they will be scanned non-recursively to
// find shared libraries. Backslashes must be either escaped by
// doubling them, or replaced by forward slashes "/".
"Plugins" : [
"/usr/local/Orthanc/share/orthanc/plugins/"
],
/**
* Configuration of the HTTP server
**/
// Enable the HTTP server. If this parameter is set to "false",
// Orthanc acts as a pure DICOM server. The REST API and Orthanc
// Explorer will not be available.
"HttpServerEnabled" : true,
// HTTP port for the REST services and for the GUI
"HttpPort" : 8042,
// When the following option is "true", if an error is encountered
// while calling the REST API, a JSON message describing the error
// is put in the HTTP answer. This feature can be disabled if the
// HTTP client does not properly handles such answers.
"HttpDescribeErrors" : true,
// Enable HTTP compression to improve network bandwidth utilization,
// at the expense of more computations on the server. Orthanc
// supports the "gzip" and "deflate" HTTP encodings.
"HttpCompressionEnabled" : true,
/**
* Configuration of the DICOM server
**/
// Enable the DICOM server. If this parameter is set to "false",
// Orthanc acts as a pure REST server. It will not be possible to
// receive files or to do query/retrieve through the DICOM protocol.
"DicomServerEnabled" : true,
// The DICOM Application Entity Title
"DicomAet" : "CLOUDPACS",
// Check whether the called AET corresponds to the AET of Orthanc
// during an incoming DICOM SCU request
"DicomCheckCalledAet" : false,
// The DICOM port
"DicomPort" : 11112,
// The default encoding that is assumed for DICOM files without
// "SpecificCharacterSet" DICOM tag, and that is used when answering
// C-Find requests (including worklists). The allowed values are
// "Ascii", "Utf8", "Latin1", "Latin2", "Latin3", "Latin4",
// "Latin5", "Cyrillic", "Windows1251", "Arabic", "Greek", "Hebrew",
// "Thai", "Japanese", and "Chinese".
"DefaultEncoding" : "Latin1",
// The transfer syntaxes that are accepted by Orthanc C-Store SCP
"DeflatedTransferSyntaxAccepted" : true,
"JpegTransferSyntaxAccepted" : true,
"Jpeg2000TransferSyntaxAccepted" : true,
"JpegLosslessTransferSyntaxAccepted" : true,
"JpipTransferSyntaxAccepted" : true,
"Mpeg2TransferSyntaxAccepted" : true,
"RleTransferSyntaxAccepted" : true,
// Whether Orthanc accepts to act as C-Store SCP for unknown storage
// SOP classes (aka. "promiscuous mode")
"UnknownSopClassAccepted" : false,
// Set the timeout (in seconds) after which the DICOM associations
// are closed by the Orthanc SCP (server) if no further DIMSE
// command is received from the SCU (client).
"DicomScpTimeout" : 30,
/**
* Security-related options for the HTTP server
**/
// Whether remote hosts can connect to the HTTP server
"RemoteAccessAllowed" : true,
// Whether or not SSL is enabled
"SslEnabled" : false,
// Path to the SSL certificate in the PEM format (meaningful only if
// SSL is enabled)
"SslCertificate" : "certificate.pem",
// Whether or not the password protection is enabled
"AuthenticationEnabled" : true,
// The list of the registered users. Because Orthanc uses HTTP
// Basic Authentication, the passwords are stored as plain text.
"RegisteredUsers" : {
"xxxxxxx" : "xxxxxxxx"
},
/**
* Network topology
**/
// The list of the known DICOM modalities
"DicomModalities" : {
"MYNAS" : ["CLOUDPACS","127.0.0.1",11112],
"ProMax-2D" : ["PROMAX","192.168.2.25",4444],
"Francesca" : ["FRANCESCA","10.123.45.101",11112],
"Newserver" : ["NEWSERVER","192.168.2.101",10010],
"Opera" : ["OPERA","192.168.2.179",104],
"Refertazione-2" : ["CLIENT", "192.168.2.99", 4441],
"Luca" : ["LUCA", "192.168.1.179", 11113],
"Doga" : ["DOGA","10.123.45.102",11112],
"Air-2" : ["AIRR","192.168.2.16",11112],
"GRouter" : ["GROUTER","192.168.1.179",4444],
"iMac-refertazione" : ["IMAC", "192.168.2.98", 4445],
"Air-3" : ["AIRRR","192.168.2.17",11112],
"Ambulatori-2" : ["AMBULATORI","192.168.2.12",11112],
"Mini-M1" : ["MINIM","192.168.2.18",11112],
"Nevada" : ["NEVADA","10.123.45.105",11112],
"PACS" : ["PACS","192.168.2.102",11112],
"Scanora" : ["SCANORADICOM","192.168.2.104",104],
"Ambulatori-3" : ["CONTABILITA","192.168.2.11",11112],
"Alberto" : ["ALBERTO","10.123.45.106",11112],
"Ambulatori-1" : ["MINII","192.168.2.13",4444],
"Marco" : ["MARCO","10.123.45.103",11112],
"Refertazione-1" : ["REFERTAZIONE","192.168.2.101",11112],
"Segreteria-2" : ["MINIII","192.168.2.14",4442],
"Calypso" : ["CALYPSO","192.168.2.178",104],
"Horos-PACS" : ["HOROSPACS","192.168.2.102",11113],
"Machado" : ["MACHADO","10.123.45.100",11112],
"Segreteria-1" : ["MINIAMBULATORI","192.168.2.19",11112],
"Anamnesi" : ["ANAMNESI","192.168.2.94",11112],
"Mauro" : ["MAURO","10.123.45.104",11112],
"Segreteria-4" : ["MINIS","192.168.2.10",11112],
"Air-1" : ["AIR","192.168.2.15",11112]
},
// Whether the Orthanc SCP allows incoming C-Store requests, even
// from SCU modalities it does not know about (i.e. that are not
// listed in the "DicomModalities" option above)
"DicomAlwaysAllowStore" : true,
// Whether Orthanc checks the IP/hostname address of the remote
// modality initiating a DICOM connection (as listed in the
// "DicomModalities" option above). If this option is set to
// "false", Orthanc only checks the AET of the remote modality.
"DicomCheckModalityHost" : false,
// The timeout (in seconds) after which the DICOM associations are
// considered as closed by the Orthanc SCU (client) if the remote
// DICOM SCP (server) does not answer.
"DicomScuTimeout" : 10,
// The list of the known Orthanc peers
"OrthancPeers" : {
/**
* Each line gives the base URL of an Orthanc peer, possibly
* followed by the username/password pair (if the password
* protection is enabled on the peer).
**/
// "peer" : [ "http://127.0.0.1:8043/", "alice", "alicePassword" ]
// "peer2" : [ "http://127.0.0.1:8044/" ]
/**
* This is another, more advanced format to define Orthanc
* peers. It notably allows to specify a HTTPS client certificate
* in the PEM format (as in the "--cert" option of curl), or to
* enable PKCS#11 authentication for smart cards.
**/
// "peer" : {
// "Url" : "http://127.0.0.1:8043/",
// "Username" : "alice",
// "Password" : "alicePassword",
// "CertificateFile" : "client.crt",
// "CertificateKeyFile" : "client.key",
// "CertificateKeyPassword" : "certpass",
// "Pkcs11" : false
// }
},
// Parameters of the HTTP proxy to be used by Orthanc. If set to the
// empty string, no HTTP proxy is used. For instance:
// "HttpProxy" : "192.168.0.1:3128"
// "HttpProxy" : "proxyUser:proxyPassword@192.168.0.1:3128"
"HttpProxy" : "",
// Set the timeout for HTTP requests issued by Orthanc (in seconds).
"HttpTimeout" : 10,
// Enable the verification of the peers during HTTPS requests. This
// option must be set to "false" if using self-signed certificates.
// Pay attention that setting this option to "false" results in
// security risks!
// Reference: http://curl.haxx.se/docs/sslcerts.html
"HttpsVerifyPeers" : true,
// Path to the CA (certification authority) certificates to validate
// peers in HTTPS requests. From curl documentation ("--cacert"
// option): "Tells curl to use the specified certificate file to
// verify the peers. The file may contain multiple CA
// certificates. The certificate(s) must be in PEM format."
"HttpsCACertificates" : "",
/**
* Advanced options
**/
// Dictionary of symbolic names for the user-defined metadata. Each
// entry must map an unique string to an unique number between 1024
// and 65535. Reserved values:
// - The Orthanc whole-slide imaging plugin uses metadata 4200
"UserMetadata" : {
// "Sample" : 1024
},
// Dictionary of symbolic names for the user-defined types of
// attached files. Each entry must map an unique string to an unique
// number between 1024 and 65535. Optionally, a second argument can
// provided to specify a MIME content type for the attachment.
"UserContentType" : {
// "sample" : 1024
// "sample2" : [ 1025, "application/pdf" ]
},
// Number of seconds without receiving any instance before a
// patient, a study or a series is considered as stable.
"StableAge" : 60,
// By default, Orthanc compares AET (Application Entity Titles) in a
// case-insensitive way. Setting this option to "true" will enable
// case-sensitive matching.
"StrictAetComparison" : false,
// When the following option is "true", the MD5 of the DICOM files
// will be computed and stored in the Orthanc database. This
// information can be used to detect disk corruption, at the price
// of a small performance overhead.
"StoreMD5ForAttachments" : true,
// The maximum number of results for a single C-FIND request at the
// Patient, Study or Series level. Setting this option to "0" means
// no limit.
"LimitFindResults" : 0,
// The maximum number of results for a single C-FIND request at the
// Instance level. Setting this option to "0" means no limit.
"LimitFindInstances" : 0,
// The maximum number of active jobs in the Orthanc scheduler. When
// this limit is reached, the addition of new jobs is blocked until
// some job finishes.
"LimitJobs" : 10,
// If this option is set to "false", Orthanc will not log the
// resources that are exported to other DICOM modalities of Orthanc
// peers in the URI "/exports". This is useful to prevent the index
// to grow indefinitely in auto-routing tasks.
"LogExportedResources" : true,
// Enable or disable HTTP Keep-Alive (deprecated). Set this option
// to "true" only in the case of high HTTP loads.
"KeepAlive" : false,
// If this option is set to "false", Orthanc will run in index-only
// mode. The DICOM files will not be stored on the drive. Note that
// this option might prevent the upgrade to newer versions of Orthanc.
"StoreDicom" : true,
// DICOM associations are kept open as long as new DICOM commands
// are issued. This option sets the number of seconds of inactivity
// to wait before automatically closing a DICOM association. If set
// to 0, the connection is closed immediately.
"DicomAssociationCloseDelay" : 5,
// Maximum number of query/retrieve DICOM requests that are
// maintained by Orthanc. The least recently used requests get
// deleted as new requests are issued.
"QueryRetrieveSize" : 10,
// When handling a C-Find SCP request, setting this flag to "true"
// will enable case-sensitive match for PN value representation
// (such as PatientName). By default, the search is
// case-insensitive, which does not follow the DICOM standard.
"CaseSensitivePN" : false,
// Configure PKCS#11 to use hardware security modules (HSM) and
// smart cards when carrying on HTTPS client authentication.
/**
"Pkcs11" : {
"Module" : "/usr/local/lib/libbeidpkcs11.so",
"Module" : "C:/Windows/System32/beidpkcs11.dll",
"Pin" : "1234",
"Verbose" : true
}
**/
// If set to "true", Orthanc will still handle "SOP Classes in
// Study" (0008,0062) in C-FIND requests, even if the "SOP Class
// UID" metadata is not available in the database (which is the case
// if the DB was previously used by Orthanc <= 1.1.0). This option
// is turned off by default, as it requires intensive accesses to
// the hard drive.
"AllowFindSopClassesInStudy" : false,
// If set to "false", Orthanc will not load its default dictionary
// of private tags. This might be necessary if you cannot import a
// DICOM file encoded using the Implicit VR Endian transfer syntax,
// and containing private tags: Such an import error might stem from
// a bad dictionary. You can still list your private tags of
// interest in the "Dictionary" configuration option below.
"LoadPrivateDictionary" : true,
// Locale to be used by Orthanc. Currently, only used if comparing
// strings in a case-insensitive way. It should be safe to keep this
// value undefined, which lets Orthanc autodetect the suitable locale.
// "Locale" : "en_US.UTF-8",
// Register a new tag in the dictionary of DICOM tags that are known
// to Orthanc. Each line must contain the tag (formatted as 2
// hexadecimal numbers), the value representation (2 upcase
// characters), a nickname for the tag, possibly the minimum
// multiplicity (> 0 with defaults to 1), possibly the maximum
// multiplicity (0 means arbitrary multiplicity, defaults to 1), and
// possibly the Private Creator (for private tags).
"Dictionary" : {
// "0014,1020" : [ "DA", "ValidationExpiryDate", 1, 1 ]
// "00e1,10c2" : [ "UI", "PET-CT Multi Modality Name", 1, 1, "ELSCINT1" ]
// "7053,1003" : [ "ST", "Original Image Filename", 1, 1, "Philips PET Private Group" ]
// "2001,5f" : [ "SQ", "StackSequence", 1, 1, "Philips Imaging DD 001" ]
}
}
If I try to upload a study via the web interface it stuck at the beginning without generating errors, while if I send from the nodes it seems that it receives the files but they are not on the DB
Please share a sample DICOM files
Hi,
Files are good: MediQPACS (is Orthanc), DCM4CHEE and Horos store it without any issue.
I think the problem can be related more to the MediQPACS SQLite DB, maybe is different from Orthanc default DB
As I thought, within the MediQPACS Changes table there were two columns not present in the Orthanc table called RemoteAET and read, I deleted them and now everything works.
Thank you